1. 1.Raman, H., Raman, R., Qiu, Y., Singh Yadav, A., Sureshkumar, S., Borg, L., Rohan, M., Wheeler, D., Owen, O., Menz, I and Balasubramanian, S (2019) GWAS hints at pleiotropic roles for FLOWERING LOCUS T in flowering time and yield-related traits in canola. BMC Genomics, 20(1):636

  2. 2.Mendez-Vigo, B., Ausin, I., Zhu, W., Molla-Morales, A., Balasubramanian, S and Alonso-Blanco, C (2019) Genetic interactions and molecular evolution of the duplicated genes ICARUS 2 and ICARUS 1 help Arabidopsis plants adapt to different ambient temperatures. Plant Cell, 31(6):1222-1237.

  3. 3.Niu, XM., Xu, YC., Li, ZW., Bian, YT., Hou, XH., Chen, JF., Zou, YP., Jiang, J., Wu, Q., Ge, S., Balasubramanian, S and Guo, YL (2019) Transposable elements drive rapid phenotypic variation in Capsella rubella. Proc. Natl. Acad. Sci, 116(14):6908-6913.

  4. 4.Casal, JJ and Balasubramanian, S (2019) Thermomorphogenesis, Ann. Rev. Plant Biol, 70:321-346.

  5. 5.Eimer, H*., Sureshkumar, S*., Singh Yadav, A., Kraupner-Taylor, C., Bandaranayake, C., Seleznev, A., Thomason, T., Fletcher, SJ., Gordon, SF., Carroll, BJ and Balasubramanian, S (2018) RNA-dependent epigenetic silencing directs transcriptional downregulation caused by intronic repeat expansions. Cell, 174(5):1095-1105.

  6. 6.Yang, L., Wang, HN., Hou, YP., Han, TS., Niu, XM., Zhang, J., Todesco, M., Balasubramanian, S and Guo, YL (2018) Parallel evolution of common allelic variants confers flowering diversity in Capsella rubella. The Plant Cell, 30(6):1309-1321, doi:10.1105/tpc.18.00124

  7. 7.Tasset, C., Singh Yadav, A., Sureshkumar, S., Singh, R., van der Woude, L., Nekrasov, M., Tremethick, D., van Zanten, M and Balasubramanian, S (2018), POWERDRESS-mediated histone deacetylation is essential for thermomorphogenesis in Arabidopsis thaliana. PLoS Genetics, 14(3):e1007280.

  8. 8.Bowman, J., Kohchi, T., Yamato, KT., Jenkins, J., Shu, S., Ishizaki, K., Yamaoka, S., Nishihama, R., Nakamura, Y., Berger, F., Adam, C., Aki, SS., Althoff, F., Araki, T., Arteaga-Vazquez, MA., Balasubramanian, S., Barry, K., Bauer, D., Boehm, CR., Briginshaw, L., Caballero-Perez, J., Catarino, B., Chen, F., Chiyoda, S., Chovatia, M., Davies, KM., Delmans, M., Demura, T., Dierschke, T., Dolan, L., Dorantes-Acosta, AE., Eklund, DM., Florent, SN., Flores-Sandoval, E., Fujiyama, A., Fukuzawa, H., Galik, B., Grimanelli, D., Grimwood, J., Grossniklaus, U., Hamada, T., Haseloff, J., Hetherington, AJ., Higo, A., Hirakawa, Y., Hundley, HN., Ikeda, Y., Inoue, K., Inoue, SI., Ishida, S., Jia, Q., Kakita, M., Kanazawa, T., Kawai, Y., Kawashima, T., Kennedy, M., Kinose, K., Kinoshita, T., Kohara, Y., Koide, E., Komatsu, K., Kopischke, S., Kubo, M., Kyozuka, J., Lagergrantz, U., Lin, SS., Lindquist, E., Lipzen, AM., Lu, CW., De Luna, E., Martienssen, RA., Minamino, N., Mizutani, M., Mizutani, M., Mochizuki, N., Monte, I., Mosher, R., Nagasaki, H., Nakagami, H., Naramoto, S., Nishitani, K., Ohtani, M., Okamoto, T., Okumura, M., Phillips, J., Pollak, B., Reinders, A., Rovekamp, M., Sano, R., Sawa, S., Schmid, MW., Shirakawa, M., Solano, R., Spunde, A., Suetsugu, N., Sugano, S., Sugiyama, A., Sun, R., Suzuki, Y., Takenaka, D., Tomogane, H., Tsuzuki, M., Ueda, T., Umeda, M., Ward, JM., Watanabe, Y., Yazaki, K., Yokoyama, R., Yoshitake, Y., Yotsui, I., Zachgo, S and Schmutz, J (2017) Insights into land plant evolution garnered from the Marchantia polymorpha genome, Cell, 171 :287-304.

  9. 9.Tabib, A., Vishwanathan, S., Seleznev, S., McKeown, P., Downing, T., Dent, C., Sanchez-Bermejo, E., Colling, L., Spillane, C and Balasubramanian, S (2016) A polynucleotide repeat expansion causing temperature-sensitivity persists in wild Irish accessions of Arabidopsis thaliana, Frontiers in Plant Science, 16 Aug 2016, doi: 10.3389/fpls.2016.01311

  10. 10.Sureshkumar, S., Dent, C., Seleznev, A., Tasset, C and Balasubramanian, S (2016) Nonsense-mediated mRNA decay modulates FLM-dependent thermosensory flowering response in Arabidopsis. Nature Plants, 29 Apr 2016, Article Number: 16055, doi: 10.1038/NPLANTS.2016.55

  11. 11.Essebier, A., Wolf, PV., Cao, MD., Carroll, BJ., Balasubramanian, S* and Boden, M (2016) Statistical enrichment of epigenetic states around triplet repeats that can undergo expansions. Frontiers in Neuroscience, 23 Feb 2016, doi:10.3389/fnins.2016.00092 (SB and MB are co-corresponding authors)

  12. 12.Sanchez-Bermejo, E and Balasubramanian, S (2015) Natural variation involving deletion alleles of FRIGIDA modulate temperature-sensitive flowering responses in Arabidopsis thaliana. Plant Cell and Environment, 12 Dec 15, doi:10.1111/pce.12690.

  13. 13.Raman, H., Raman, R., Coombes, N., Song, J., Pragnell, R., Banadaranayake, C., Tahira, R., Sundaramoorthi, V., Killian, A., Meng, J., Dennis, ES and Balasubramanian, S (2015) Genome-wide association analyses reveal complex genetic architecture underlying natural variation for flowering time in canola. Plant Cell and Environment, 1 Oct 15, doi:10.1111/pce.12644.

  14. 14.Sanchez-Bermejo.E*., Zhu, W*., Tasset, C., Eimer, H., Sureshkumar, S., Singh, R., Sundaramoorthi, V., Colling, L and Balasubramanian, S (2015) Genetic architecture of natural variation in thermal responses of Arabidopsis. Plant Physiology, 169:647-659. (*equal contribution)

  15. 15.Zhu, W*., Ausin, I*., Seleznev, A., Mendez-Vigo, B., Pico, FX., Sureshkumar, S. ,Sundaramoorthi, V., Bulach, D., Powell, D., Seemann, T., Alonso-Blanco, C and Balasubramanian, S (2015) Natural variation identifies ICARUS1, a universal gene required for cell proliferation and growth at high temperatures in Arabidopsis thaliana, PLoS Genetics, 11(5):e1005085 (* equal contribution and (S.B and CAB are co-corresponding authors)

  16. 16.Cao, MD., Balasubramanian, S and Bodén, M (2014) Sequencing technologies and tools for short tandem repeat variation detection. Brief Bioinform. Feb 6, doi:10.1093/bib/bbu001.

  17. 17.Cao, MD., Tasker, E., Willadsen, K., Imelfort, M., Vishwanathan, S., Sureshkumar, S., Balasubramanian, S* and Bodén, M* (2014) Inferring short tandem repeat variation from paired-end short reads. Nucleic Acids Res, 42(3):e16. (SB and MB are co-corresponding authors)

  18. 18.Willadsen, K., Cao, MD., Wiles, J., Balasubramanian, S and Bodén, M (2013) Repeat-encoded poly-Q tracts show statistical commonalities across species. BMC Genomics, 14:76

  19. 19.Rosloski, SM., Singh, A., Jali, SS., Balasubramanian, S., Weigel, D and Grbic, V (2013) Functional analysis of splice variant expression of MADS AFFECTING FLOWERING 2 of Arabidopsis thaliana. Plant Mol Biol 81 (1-2): 57-69.

  20. 20.Todesco, M., Balasubramanian, S., Cao, J., Ott, F., Sureshkumar, S., Schneeberger, K., Meyer, RC., Altmann, T and Weigel, D (2012) Natural variation in biogenesis efficiency of individual Arabidopsis thaliana microRNAs. Current Biology, 22 : 166-170

  21. 21.Rosloski, SM., Jali, SS., Balasubramanian, S., Weigel, D and Grbic, V (2010) Natural diversity in flowering responses of Arabidopsis thaliana caused by variation in a tandem gene array. Genetics, 186 : 263 - 276.

  22. 22.Todesco, M*., Balasubramanian, S*., Hu, TH., Traw, BM., Horton, M., Epple, P., Kuhns, C., Sureshkumar, S., Schwartz, S., Lanz, C., Laitinen, RAE., Huang, Y., Chory, J., Lipka, V., Borevitz, JO., Dangl, JL., Bergelson, J., Nordborg, M and Weigel, D (2010) Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. Nature. 465 : 632 - 636. [* equal contribution]

  23. 23.Koo, SC., Bracko, O., Park, MS., Schwab, R., Chun, HJ., Park, KM., Seo, JS., Grbic, V., Balasubramanian, S., Schmid, M., Godard, F., Yun, DJ., Weigel, D and Kim, MC (2010) Control of lateral organ development and flowering time by the Arabidopsis thaliana MADS-box gene AGAMOUS LIKE 6. The Plant Journal, 62 : 807 - 816.

  24. 24.Schwartz, CS*., Balasubramanian, S*., Warthmann, N., Michael, TP., Lempe, J., Sureshkumar, S., Kobayashi, Y., Maloof, JN., Borevitz, JO., Chory, J and Weigel, D (2009). Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. Genetics, 183 : 723 - 732. [* equal contribution]

  25. 25.Sureshkumar, S*., Todesco, M*., Schneeberger, K., Harilal, R., Balasubramanian, S and Weigel, D (2009). A genetic defect caused by a triplet repeat expansion in Arabidopsis thaliana. Science, 323: 1060 - 1063 (S.B & D.W  are co-corresponding authors)

  26. 26.Balasubramanian, S*., Schwartz, C.S*., Singh, A., Warthmann, N., Kim, MC., Maloof, JN., Loudet, O., Trainer, G., Dabi, T., Borevitz, J., Chory, J and Weigel, D (2009). QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines. PLoS ONE, 4 (2): e4318. [* equal contribution]

  27. 27.Schneitz, K and Balasubramanian, S, (2009), Floral Meristems. In. Encyclopedia of Life Sciences (ELS). John Wiley & Sons, Ltd: Chichester. DOI: 10. 1002/ 9780470015902.a0020071.pub3

  28. 28.Balasubramanian, S and Weigel, D (2006) Temperature induced flowering in Arabidopsis thaliana.  Plant Signaling & Behavior , 1 (5), 227-228.

  29. 29. Balasubramanian, S., Sureshkumar, S., Lempe, J and Weigel, D (2006) Potent induction of Arabidopsis thaliana flowering by elevated growth temperature. PLoS Genetics, 2(7): e106

  30. 30. Balasubramanian, S*., Sureshkumar, S*., Agrawal, M., Micheals, T., Weissinger, C., Maloof, JN, Clark, R., Warthmann, N., Chory, J and Weigel D (2006) The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. Nature Genetics, 38: 711-715

  31. 31. Balasubramanian, S. and Schneitz, K. (2006) Molecular Control of Ovule Development. In Handbook of Seed Science and Technology (ed. Basra, A). Haworth Press Inc, USA p3-25.

  32. 32. Lempe, J*., Balasubramanian, S*., Sureshkumar, S., Singh, A., Schmid, M and Weigel, D (2005) Diversity of flowering responses in wild Arabidopsis thaliana strains. PLoS Genetics, 1(1): e6

  33. 33. Balasubramanian, S (2004), Natural variation and QTL mapping in understanding plant development, Proceedings of Indian National Academy of Sciences – Biological Sciences (PINSA-B), India: B70(4): 453-465.

  34. 34. Katyare, S. S., Balasubramanian, S. and Parmar, D.V. (2003) Effects of corticosterone treatment on mitochondrial energy metabolism in developing rat brain. Expt. Neurol. 183, 241-248

  35. 35. Balasubramanian, S. and Schneitz, K. (2002) NOZZLE links proximal-distal and adaxial-abaxial pattern formation during ovule development in Arabidopsis thaliana. Development 129, 4290-4297

  36. 36. Balasubramanian, S. and Schneitz, K. (2000) NOZZLE regulates proximal-distal pattern formation, cell proliferation and early sporogenesis during ovule development in Arabidopsis thaliana. Development 127, 4227-4238.

  37. 37. Schiefthaler, U., Balasubramanian, S., Sieber, P., Chevalier, D., Wismen, E. and Schneitz, K. (1999). Molecular analysis of NOZZLE, a gene involved in pattern formation and early sporogenesis during sex organ development in Arabidopsis thaliana. Proc. Natl Acad Sci USA 96, 11664-11669.

  38. 38. Schneitz, K., Balasubramanian, S. and Schiefthaler, U. (1998). Organogenesis in plants: the molecular and genetic control of ovule development. Trends Plant Sci. 3, 468-472