"Publish in order to advance research and scholarship, not to advance just your own career. Avoid wasteful and duplicative publication"

- From " What is Ethics in Research and Why Is it Important?"  

by: Prof David Resnik, Bioethicist, NIEHS, NIH, USA

Original Research Articles

35. Dent, CI., Singh, S., Mukherjee, S., Mishra, S., Sarwade, RS., Shamaya, N., Loo, KP., Harrison, P., Sureshkumar, S., Powell, D and Balasubramanian, S (2021) Quantifying splice-site usage: a simple yet powerful approach to analyze splicing. NAR Genomics and Bioinformatics, 3(2): 1.

34. Slane, D., Lee, CH., Kolb, M., Dent, C., Miao, Y., Franz-Wachtel, M., Lau, S., Macek, B., Balasubramanian, S., Bayer, M., Jurgens, G (2020) The integral spliceosomal component CWC15 is required for development in Arabidopsis. Scientific Reports, 10(1):1-13.

33. Raman, H., Raman, R., McVittie, B., Borg, L., Diffey, S., Singh Yadav, A., Balasubramanian, S and Farquhar, G (2020) Genetic and physiological bases for variation in water use efficiency in canola, Food and Energy Security, 9(4):e237.

32. van der Woude, LC., Perrella, G., Snoek, B., Hoogdalem, MV., Novak, O., van Verk, MC., van Kooten, HN., Zorn, LE., Tonckens, R., Dongus, JA., Praat, M., Stouten, EA., Proveniers, MCG., Vellutini, E., Shapulatov, U., Kohlen, W., Balasubramanian, S., Ljung, K., van der Krol, AR., Smeekens, S., Kaiserli, E and van Zanten, M (2019) HISTONE DEACETYLASE 9 stimulates auxin-dependent thermomorphogenesis in Arabidopsis thaliana by mediating H2A.Z depletion, Proc Natl Acad Sci, 116(50):25343-25354.

31. Raman, H., Raman, R., Qiu, Y., Singh Yadav, A., Sureshkumar, S., Borg, L., Rohan, M., Wheeler, D., Owen, O., Menz, I and Balasubramanian, S (2019) GWAS hints at pleiotropic roles for FLOWERING LOCUS T in flowering time and yield-related traits in canola. BMC Genomics, 20(1):636

30. Mendez-Vigo, B., Ausin, I., Zhu, W., Molla-Morales, A., Balasubramanian, S and Alonso-Blanco, C (2019) Genetic interactions and molecular evolution of the duplicated genes ICARUS 2 and ICARUS 1 help Arabidopsis plants adapt to different ambient temperatures. Plant Cell, 31(6):1222-1237.

29. Niu, XM., Xu, YC., Li, ZW., Bian, YT., Hou, XH., Chen, JF., Zou, YP., Jiang, J., Wu, Q., Ge, S., Balasubramanian, S and Guo, YL (2019) Transposable elements drive rapid phenotypic variation in Capsella rubella. Proc. Natl. Acad. Sci, 116(14):6908-6913.

28. Eimer, H*., Sureshkumar, S*., Singh Yadav, A., Kraupner-Taylor, C., Bandaranayake, C., Seleznev, A., Thomason, T., Fletcher, SJ., Gordon, SF., Carroll, BJ and Balasubramanian, S (2018) RNA-dependent epigenetic silencing directs transcriptional downregulation caused by intronic repeat expansions. Cell, 174(5):1095-1105 [* shared first authors]

27. Yang, L., Wang, HN., Hou, YP., Han, TS., Niu, XM., Zhang, J., Todesco, M., Balasubramanian, S and Guo, YL (2018) Parallel evolution of common allelic variants confers flowering diversity in Capsella rubella. The Plant Cell, 30(6):1309-1321.

26. Tasset, C., Singh Yadav, A., Sureshkumar, S., Singh, R., van der Woude, L., Nekrasov, M., Tremethick, D., van Zanten, M and Balasubramanian, S (2018), POWERDRESS-mediated histone deacetylation is essential for thermomorphogenesis in Arabidopsis thaliana. PLoS Genetics, 14(3):e1007280.

25. Bowman, J., Kohchi, T., Yamato, KT., Jenkins, J., Shu, S., Ishizaki, K., Yamaoka, S., Nishihama, R., Nakamura, Y., Berger, F., Adam, C., Aki, SS., Althoff, F., Araki, T., Arteaga-Vazquez, MA., Balasubramanian, S., Barry, K., Bauer, D., Boehm, CR., Briginshaw, L., Caballero-Perez, J., Catarino, B., Chen, F., Chiyoda, S., Chovatia, M., Davies, KM., Delmans, M., Demura, T., Dierschke, T., Dolan, L., Dorantes-Acosta, AE., Eklund, DM., Florent, SN., Flores-Sandoval, E., Fujiyama, A., Fukuzawa, H., Galik, B., Grimanelli, D., Grimwood, J., Grossniklaus, U., Hamada, T., Haseloff, J., Hetherington, AJ., Higo, A., Hirakawa, Y., Hundley, HN., Ikeda, Y., Inoue, K., Inoue, SI., Ishida, S., Jia, Q., Kakita, M., Kanazawa, T., Kawai, Y., Kawashima, T., Kennedy, M., Kinose, K., Kinoshita, T., Kohara, Y., Koide, E., Komatsu, K., Kopischke, S., Kubo, M., Kyozuka, J., Lagergrantz, U., Lin, SS., Lindquist, E., Lipzen, AM., Lu, CW., De Luna, E., Martienssen, RA., Minamino, N., Mizutani, M., Mizutani, M., Mochizuki, N., Monte, I., Mosher, R., Nagasaki, H., Nakagami, H., Naramoto, S., Nishitani, K., Ohtani, M., Okamoto, T., Okumura, M., Phillips, J., Pollak, B., Reinders, A., Rovekamp, M., Sano, R., Sawa, S., Schmid, MW., Shirakawa, M., Solano, R., Spunde, A., Suetsugu, N., Sugano, S., Sugiyama, A., Sun, R., Suzuki, Y., Takenaka, D., Tomogane, H., Tsuzuki, M., Ueda, T., Umeda, M., Ward, JM., Watanabe, Y., Yazaki, K., Yokoyama, R., Yoshitake, Y., Yotsui, I., Zachgo, S and Schmutz, J (2017) Insights into land plant evolution garnered from the Marchantia polymorpha genome, Cell, 171 :287-304.

24. Tabib, A., Vishwanathan, S., Seleznev, S., McKeown, P., Downing, T., Dent, C., Sanchez-Bermejo, E., Colling, L., Spillane, C and Balasubramanian, S (2016) A polynucleotide repeat expansion causing temperature-sensitivity persists in wild Irish accessions of Arabidopsis thaliana, Frontiers in Plant Science, 7:1311.

23. Sureshkumar, S., Dent, C., Seleznev, A., Tasset, C and Balasubramanian, S (2016) Nonsense-mediated mRNA decay modulates FLM-dependent thermosensory flowering response in Arabidopsis. Nature Plants, 2(5):16055

22. Essebier, A., Wolf, PV., Cao, MD., Carroll, BJ., Balasubramanian, S* and Boden, M (2016) Statistical enrichment of epigenetic states around triplet repeats that can undergo expansions. Frontiers in Neuroscience, 10:92 [* SB and MB are co-corresponding authors]

21. Sanchez-Bermejo, E and Balasubramanian, S (2015) Natural variation involving deletion alleles of FRIGIDA modulate temperature-sensitive flowering responses in Arabidopsis thaliana. Plant Cell and Environment, 39(6):1353-1365.

20. Raman, H., Raman, R., Coombes, N., Song, J., Pragnell, R., Banadaranayake, C., Tahira, R., Sundaramoorthi, V., Killian, A., Meng, J., Dennis, ES and Balasubramanian, S (2016) Genome-wide association analyses reveal complex genetic architecture underlying natural variation for flowering time in canola. Plant Cell and Environment, 39(6):1228-1239.

19. Sanchez-Bermejo.E*., Zhu, W*., Tasset, C., Eimer, H., Sureshkumar, S., Singh, R., Sundaramoorthi, V., Colling, L and Balasubramanian, S (2015) Genetic architecture of natural variation in thermal responses of Arabidopsis. Plant Physiology, 169:647-659. [* shared first authors]

18. Zhu, W*., Ausin, I*., Seleznev, A., Mendez-Vigo, B., Pico, FX., Sureshkumar, S. ,Sundaramoorthi, V., Bulach, D., Powell, D., Seemann, T., Alonso-Blanco, C and Balasubramanian, S (2015) Natural variation identifies ICARUS1, a universal gene required for cell proliferation and growth at high temperatures in Arabidopsis thaliana, PLoS Genetics, 11(5):e1005085 [* equal contribution and S.B and CAB are co-corresponding authors]

17. Cao, MD., Tasker, E., Willadsen, K., Imelfort, M., Vishwanathan, S., Sureshkumar, S., Balasubramanian, S* and Bodén, M* (2014) Inferring short tandem repeat variation from paired-end short reads. Nucleic Acids Res, 42(3):e16. [* SB and MB are co-corresponding authors]

16. Willadsen, K., Cao, MD., Wiles, J., Balasubramanian, S and Bodén, M (2013) Repeat-encoded poly-Q tracts show statistical commonalities across species. BMC Genomics, 14:76

15. Rosloski, SM., Singh, A., Jali, SS., Balasubramanian, S., Weigel, D and Grbic, V (2013) Functional analysis of splice variant expression of MADS AFFECTING FLOWERING 2 of Arabidopsis thaliana. Plant Mol Biol 81 (1-2): 57-69.

14. Todesco, M., Balasubramanian, S., Cao, J., Ott, F., Sureshkumar, S., Schneeberger, K., Meyer, RC., Altmann, T and Weigel, D (2012) Natural variation in biogenesis efficiency of individual Arabidopsis thaliana microRNAs. Current Biology, 22 : 166-170

13. Rosloski, SM., Jali, SS., Balasubramanian, S., Weigel, D and Grbic, V (2010) Natural diversity in flowering responses of Arabidopsis thaliana caused by variation in a tandem gene array. Genetics, 186 : 263 - 276.

12. Todesco, M*., Balasubramanian, S*., Hu, TH., Traw, BM., Horton, M., Epple, P., Kuhns, C., Sureshkumar, S., Schwartz, S., Lanz, C., Laitinen, RAE., Huang, Y., Chory, J., Lipka, V., Borevitz, JO., Dangl, JL., Bergelson, J., Nordborg, M and Weigel, D (2010) Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. Nature. 465 : 632 - 636. [* shared first authors]

11. Koo, SC., Bracko, O., Park, MS., Schwab, R., Chun, HJ., Park, KM., Seo, JS., Grbic, V., Balasubramanian, S., Schmid, M., Godard, F., Yun, DJ., Weigel, D and Kim, MC (2010) Control of lateral organ development and flowering time by the Arabidopsis thaliana MADS-box gene AGAMOUS LIKE 6. The Plant Journal, 62 : 807 - 816.

10. Schwartz, CS*., Balasubramanian, S*., Warthmann, N., Michael, TP., Lempe, J., Sureshkumar, S., Kobayashi, Y., Maloof, JN., Borevitz, JO., Chory, J and Weigel, D (2009). Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. Genetics, 183 : 723 - 732. [* shared first authors]

9. Sureshkumar, S*., Todesco, M*., Schneeberger, K., Harilal, R., Balasubramanian, S and Weigel, D (2009). A genetic defect caused by a triplet repeat expansion in Arabidopsis thaliana. Science, 323: 1060 - 1063 [S.B & D.W  are co-corresponding authors]

8. Balasubramanian, S*., Schwartz, C.S*., Singh, A., Warthmann, N., Kim, MC., Maloof, JN., Loudet, O., Trainer, G., Dabi, T., Borevitz, J., Chory, J and Weigel, D (2009). QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines. PLoS ONE, 4 (2): e4318. [* shared first authors]

7. Balasubramanian, S., Sureshkumar, S., Lempe, J and Weigel, D (2006) Potent induction of Arabidopsis thaliana flowering by elevated growth temperature. PLoS Genetics, 2(7): e106

6. Balasubramanian, S*., Sureshkumar, S*., Agrawal, M., Micheals, T., Weissinger, C., Maloof, JN, Clark, R., Warthmann, N., Chory, J and Weigel D (2006) The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. Nature Genetics, 38: 711-715 [* shared first authors]

5. Lempe, J*., Balasubramanian, S*., Sureshkumar, S., Singh, A., Schmid, M and Weigel, D (2005) Diversity of flowering responses in wild Arabidopsis thaliana strains. PLoS Genetics, 1(1): e6 [* shared first authors]

4. Katyare, S. S., Balasubramanian, S. and Parmar, D.V. (2003) Effects of corticosterone treatment on mitochondrial energy metabolism in developing rat brain. Expt. Neurol. 183, 241-248

3. Balasubramanian, S. and Schneitz, K. (2002) NOZZLE links proximal-distal and adaxial-abaxial pattern formation during ovule development in Arabidopsis thaliana. Development 129, 4290-4297

2. Balasubramanian, S. and Schneitz, K. (2000) NOZZLE regulates proximal-distal pattern formation, cell proliferation and early sporogenesis during ovule development in Arabidopsis thaliana. Development 127, 4227-4238.

1. Schiefthaler, U., Balasubramanian, S., Sieber, P., Chevalier, D., Wismen, E. and Schneitz, K. (1999). Molecular analysis of NOZZLE, a gene involved in pattern formation and early sporogenesis during sex organ development in Arabidopsis thaliana. Proc. Natl Acad Sci USA 96, 11664-11669.

Reviews and Other Articles

9. Zarnack, K., Balasubramanian, S., Gantier, MP., Kunetsky, V., Kracht, M., Schmitz, ML and Strasser, K (2020) Dynamic mRNP remodeling in response to internal and external stimuli, Biomolecules, 10(9):1310.

8. Balasubramanian, S (2020) Don't recruit graduates on flawed criteria, Nature, 578(7793):37-37

7. Casal, JJ and Balasubramanian, S (2019) Thermomorphogenesis, Ann. Rev. Plant Biol, 70:321-346.

6. Cao, MD., Balasubramanian, S and Bodén, M (2014) Sequencing technologies and tools for short tandem repeat variation detection. Brief Bioinform. Feb 6, doi:10.1093/bib/bbu001.

5. Schneitz, K and Balasubramanian, S, (2009), Floral Meristems. In. Encyclopedia of Life Sciences (ELS). John Wiley & Sons, Ltd: Chichester. DOI: 10. 1002/ 9780470015902.a0020071.pub3

4. Balasubramanian, S and Weigel, D (2006) Temperature induced flowering in Arabidopsis thaliana.  Plant Signaling & Behavior , 1 (5), 227-228.

3. Balasubramanian, S. and Schneitz, K. (2006) Molecular Control of Ovule Development. In Handbook of Seed Science and Technology (ed. Basra, A). Haworth Press Inc, USA p3-25.

2. Balasubramanian, S (2004), Natural variation and QTL mapping in understanding plant development, Proceedings of Indian National Academy of Sciences – Biological Sciences (PINSA-B), India: B70(4): 453-465.

1. Schneitz, K., Balasubramanian, S. and Schiefthaler, U. (1998). Organogenesis in plants: the molecular and genetic control of ovule development. Trends Plant Sci. 3, 468-472